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When you delete an app, by default, all versions of the app and associated portal items are irrevocably deleted, including the Production, Staging, Testing and Development versions. A confirmation dialog will appear, allowing you to select which parts to delete.
You cannot delete an app that is currently open in Web Designer. To delete an app that is currently open, you must either click or open another app.
To delete an app:
On the taskbar, click File | My Apps.
If you are unable to see the app you want to use, type the name of it into the Search box, and then click Search.
Beside the app you want to delete, click .
A menu appears.
A confirmation dialog appears.
Click the ArcGIS Online Items box to review which items are to be deleted.
Carefully select the items you want to delete and click Delete x items.
All selected items are irrevocably deleted.